PLEASE CALL CSI CLIENT SERVICES AT (800) 459-1185 TO INQUIRE ABOUT TESTS NOT LISTED BELOW
SPECIMEN REQUIREMENTS SHIP SPECIMENS WITH COLD PACK
Flow Cytometry
Peripheral Blood 3 mL in sodium heparin (green top) - preferred or 3 mL in EDTA (purple top)
Bone Marrow Aspirate 1-2 mL in sodium heparin (green top) - preferred or 1-2 mL in EDTA (purple top)
FreshTissue Mulple 2-3 mm pieces of ssue in RPMI transport media (opmum RPMI to ssue rao is 15:1; mulple vials are acceptable)
Body Fluids Mix 1:1 in RPMI transport media
PNH Prole 3 mL peripheral blood in EDTA (purple top) preferred, should be processed within 24 hours of collecon
Cytogenecs
Peripheral Blood 5 mL in sodium heparin (green top)
Bone Marrow Aspirate 2-3 mL in sodium heparin (green top)
Cord Blood 2-5 mL in sodium heparin (green top)
Fresh Tissue Mulple 2-3 mm pieces of ssue in RPMI transport media (opmum RPMI to ssue rao is 15:1; mulple vials are acceptable)
FISH
Peripheral Blood 3 mL in sodium heparin (green top) - preferred or 3 mL in EDTA (purple top)
Bone Marrow Aspirate 2-3 mL in sodium heparin (green top) - preferred or 3 mL in EDTA (purple top)
Fresh Tissue Mulple 2-3 mm pieces of ssue in RPMI transport media (opmum RPMI to ssue rao is 15:1; mulple vials are acceptable)
Formalin-Fixed Paran-
Embedded Tissue
Minimum 0.2 x 0.2 x 0.2 cm ssue; non-decalcied ssue only (FISH only)
Molecular
Peripheral Blood 5-10 mL EDTA tube (purple top) - preferred; ACD (yellow top) acceptable
Bone Marrow 1-2 mL in EDTA tube (purple top) - preferred; ACD (yellow top) acceptable
Fresh Tissue Minimum of 250 mg ssue in RPMI transport media
Formalin-Fixed Paran-
Embedded Tissue
1 H&E slide and 6-8 unstained slides, 5-7 microns of BM clot or ssue xed with 10% NBF xave. Please circle tumor for microdissecon. Alternavely, the FFPE block of the BM clot can be
sent for seconing in our lab.
IHC 1 H&E slide with its corresponding paran block (10% neutral buered formalin) - preferred
HEMATOLOGY PROFILE AND LIQUID BIOPSY GENES TESTED FOR ABNORMALITIES
ABL1 BCL2 CBL CDKN2C DICER1 FAS IDH2 KMT2A MPL PAX5 PTCH1 SMAD2 TGFBR2
AKT1 BCL2L1 CBLB CEBPA DNMT3A FBXW7 IGF1R KMT2B MRE11A PBRM1 PTEN SMAD4 TP53
AKT2 BCL6 CBLC CHEK1 EP300 FLT3 IKZF1 KMT2C MTOR PDGFRA PTPN11 SMARCA4 TSC1
AKT3 BCOR CCND1 CHEK2 ERG GATA1 IKZF3 KMT2D MUTYH PDGFRB RAD21 SMARCB1 TSC2
ALK BCORL1 CCND3 CIC ETV6 GATA2 IRF4 KRAS MYC PHF6 RAD50 SMC1A TSHR
AMER1 BCR CD274 CREBBP EZH2 GATA3 JAK1 MAP2K1 MYD88 PIK3CA RAD51 SMO WT1
APC BIRC3 CD79A CRLF2 FAM175A GEN1 JAK2 MAP2K2 NFKBIA PIK3R1 RB1 SOCS1 ZNF217
ARID1A BLM CD79B CSF1R FAM46C GNAQ JAK3 MAP2K4 NOTCH1 PIK3R2 RHOA SRC ZRSR2
ARID1B BRAF CDH1 CSF3R FANCA GNAS KAT6A MAP3K1 NOTCH2 PIM1 RNF43 SRSF2 MEF2B
ARID2 BRCA1 CDK12 CTNNA1 FANCC H3F3A KDM5C MAP3K14 NOTCH3 PLCG1 RUNX1 STAG2
ASXL1 BRCA2 CDK4 CTNNB1
FANCD2 HNF1A KDM6A MAPK1 NPM1 POLD1 SDHB STAT 3
ATM BTK CDK6 CUX1 FANCE HOXB13 KDR MCL1 NRAS POLE SETBP1 STK11
ATRX CALR CDKN2A CXCR4 FANCF HSP90AA1 KEAP1 MDM2 NSD1 PPM1D SETD2 TERT
B2M CARD11 CDKN2B DDR2 FANCG IDH1 KIT MDM4 PALB2 PPP2R1A SF3B1 TET2
*CONSULTATION LEVELS
CPT Code 88321 Consultaon and report on slides NOT prepared by CSI Laboratories
CPT Code 88323 Consultaon and report on slides prepared by CSI Laboratories (includes review of pathology report only; no other addional medical records review)
CPT Code 88325
Consultaon and report on slides prepared by CSI Laboratories, including complete medical records review (complete medical records include but are not limited to pathology reports, surgical notes, radiology reports,
laboratory results, etc.)
FISH PANELS WITH REFLEX CONDITIONS. (FOR TECH-ONLY SERVICES, REFLEX OPTIONS MUST BE INITIATED BY SIGNING PATHOLOGIST)
AML - Panel 1 - [t(15;17)/PML-RARA]
*IF NEGATIVE, REFLEX TO: t(8;21)/RUNX1T1-RUNX1, inv16/CBFB-Break apart, KMT2A(MLL)-Break apart
*IF gain of RARA, REFLEX TO: RARA-Break apart
AML - Panel 2 - [5q/EGR1, 7q/CEP7, CEP8, 20q, RB1-LAMP1, KMT2A(MLL)-Break apart, t(9;22)/BCR-ABL1]
AML - Panel 3 - [5q/EGR1, 7q/CEP7, KMT2A(MLL)-Break apart, t(8;21)/RUNX1T1-RUNX1, inv16/CBFB-Break apart, t(9;22)/BCR-ABL1]
*IF NEGATIVE, REFLEX TO: RB1-LAMP1, 20q, CEP8
AML - Panel 4 - [t(8;21)/RUNX1T1-RUNX1, inv16/CBFB-Break apart, KMT2A(MLL)-Break apart] - global
AML with monocyc dierenaon - [inv16/CBFB-Break apart, KMT2A(MLL)-Break apart] - global
B – ALL - [ t(9;22)/BCR-ABL1, KMT2A(MLL)-Breakapart, t(12;21)/ETV6-RUNX1, CRLF2-Breakapart, CEP4/CEP10/CEP17] - global
*IF NEGATIVE, REFLEX TO: [9p21/CDKN2A-CEP9, IGH- Breakapart , MYC-Breakapart] - global
*IF gain of ETV6, REFLEX TO: [ETV6-Breakapart] - global
Burki Only - [t(8;14)/IGH-MYC, MYC-Break apart]
*IF GAIN of IGH, REFLEX: [t(14;18)/IGH-BCL2, BCL6-Break apart, BCL2-Break apart]
*IF clinically indicated for MCL, REFLEX: [t(6:14)/CCND3-IGH, t(11;14)/CCND1-IGH, CCND1-Break apart, CCND2-Break apart]
CLL/SLL + Mantle cell - [CLL1/(ATM/TP53), CLL2/(13q14.3/LAMP1/CEP12),IGH-Break apart, MYB-CEP6, RB1-LAMP1, t(11;14)/CCND1-IGH]
*IF IGH Rearranged, REFLEX: t(14;18)/IGH-BCL2
*IF unresolved queson of MCL, REFLEX: [t(6:14)/CCND3-IGH, CCND1-Break apart, CCND2-Break apart]
CLL/SLL - [CLL1/(ATM/TP53), CLL2/(13q14.3/LAMP1/CEP12),IGH-Break apart, MYB-CEP6, RB1-LAMP1]
*IF IGH Rearranged, REFLEX: [t(11;14)/CCND1-IGH] and/or [t(6:14)/CCND3-IGH, t(14;18)/IGH-BCL2,CCND2-Break apart] if indicated
CML - [t(9;22)/BCR-ABL1]
*IF POSITIVE, REFLEX: (BCR-ABL1(p210/p190) by RT-PCR
Eosinophilia - [PDGFRA-Break apart, PDGFRB-Break apart, FGFR1-Break apart], JAK2-Break apart
Follicular Center Lymphoma - [t(14;18)/IGH-BCL2, BCL6-Break apart, BCL2-Break apart]
*IF GAIN IGH, REFLEX: [t(8;14)/IGH-MYC, MYC-Break apart]
*IF queson of MCL by Flow, REFLEX: [t(6:14)/CCND3-IGH, t(11;14)/CCND1-IGH, CCND1-Break apart, CCND2-Break apart]
HGBL/Triple Hit - [t(8;14)/IGH-MYC, MYC-Break apart, t(14;18)/IGH-BCL2, BCL6-Break apart, BCL2-Break apart]
*IF clinically indicated for MCL, REFLEX: [t(6:14)/CCND3-IGH, t(11;14)/CCND1-IGH, CCND1-Break apart, CCND2-Break apart]
LPL/Waldenstrom [MYB-CEP6, IGH-Break apart]
MALT Only - [MALT1-Break apart, BCL6-Break apart,t(11;18)/BIRC3-MALT1]
*IF MALT1 rearranged, REFLEX TO: [ t(14;18)/IGH-MALT1]
Marginal Zone - [7q/CEP7, CEP12, BCL6-Break apart, MALT1-Break apart, IGH-Break apart, TP53/CEP17]
*IF MALT1-Break apart rearranged, REFLEX TO: [t(11;18)/BIRC3-MALT1, t(14;18)/IGH-MALT1]
*IF IGH-Break apart rearranged, REFLEX TO: [t(11;14)/CCND1-IGH, CCND1-Break apart, t(14;18)/IGH-BCL2]
*IF unresolved queson of MCL, REFLEX: [t(6:14)/CCND3-IGH, CCND2-Break apart]
Mantle Cell - [t(11;14)/CCND1-IGH, CCND1-Break apart]
*IF Negave and clinically indicated, REFLEX: [t(6:14)/CCND3-IGH, CCND2-Break apart]
Mantle cell, Reex CLL/SLL - [t(11;14)/CCND1-IGH,CCND1-Break apart]
*IF NEGATIVE, REFLEX TO: [CLL/SLL Panel]
*IF Negave and clinically indicated, REFLEX: [t(6:14)/CCND3-IGH, CCND2-Break apart]
MDS - [5q/EGR1, 7q/CEP7, CEP8, 20q, RB1-LAMP1, KMT2A(MLL)-Break apart, TP53/CEP17]
MPN - [t(9;22)/BCR-ABL1, 5q/EGR1, 7q/CEP7, CEP8, 9p21/CDKN2A-CEP9, 20q, RB1-LAMP1]
MPN/Eosinophilia - [t(9;22)/BCR-ABL1, 4q12/PDGFRA-Break apart, PDGFRB-Break apart, FGFR1-Break apart], JAK2-Break apart
Myeloma/PCD Panel - [1p/1q, RB1-LAMP1, IGH-Break apart, TP53/CEP17, t(11;14)/CCND1-IGH, CEP9/CEP11]
*IF IGH is rearranged, but Negave for t(11;14)/CCND1-IGH; REFLEX TO: [t(4:14)/FGFR3-IGH, t(6:14)/CCND3-IGH, t(14;16)/IGH-MAF, t(14;20)/IGH-MAFB]
*IF GAIN of CCND1, without GAIN of CEP11, REFLEX: [CCND1-Break apart]
PML-RARA [t(15;17)]
T-ALL - [t(9;22)/BCR-ABL1, (9p21)/CDKN2A-CEP9, KMT2A(MLL)-Break apart]
*IF NEGATIVE, REFLEX TO: [1p33, t(5;14), t(10;11), 7q/CEP734, 14q11.2]
T-PLL [TCL1 for inversion 14 and t(14;14); TRA for t(X;14)]
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